Publications

(59) Ray, A.; Passiu, C.; Nasuda, M.; Ramakrishna, S. N.; Rossi, A.; Kuzuya, A.; Spencer, N. D.; Yamakoshi, Y.*: Reactive-Oxygen-Species-Mediated Surface Oxidation of Single-Molecule DNA Origami by an Atomic Force Microscope Tip-Mounted C₆₀ Photocatalyst. ACS Nano ASAP.

(58) Liosi, K; Stasyuk, A. J.; Masero, F.; Voityuk, A. A.; Nauser, N.; Mougel, V.*; Sola, M.*; Yamakoshi, Y.*: Unexpected Disparity in Photoinduced Reactions of C₆₀ and C₇₀ in Water with the Generation of O₂•^– or ¹O₂. JACS Au, 2021, 1, 1601-1611 [selected as Paper of Month by Spanish Biophysical Society].

(57) Fracassi, A.;^# Ray, A.;^# Nakatsuka, N.; Passiu, C.; Tanriver, M.; Schauenburg, D.; Scherrer, S.; Ouald Chaib, A.; Mandal, J.; Ramakrishna, S. N.; Bode, J. W.; Spencer, N. D.; Rossi, A.; and Yamakoshi, Y.*: KAT ligation for rapid and facile covalent attachment of biomolecules to surfaces. ACS Appl. Mater. Interfaces 2021, 13, 29113–29121 (^#equal contribution).

(Preprint 2) Fracassi, A., Ray, A., Nakatsuka, N., Passiu, C., Tanriver, M., Schauenburg, D., Scherrer, S., Ramakrishna, S.N, Bode, J., Spencer, N. D., Rossi, A., Yamakoshi, Y.: KAT Ligation for Rapid and Facile Covalent Attachment of Biomolecules to Surfaces. 2021 external pagelinkcall_made 

(Preprint 1) Ray, A., Passiu, C., Ramakrishna S. N., Rossi, A., Kuzuya, A., Spencer, N. D., Yamakoshi Y.: Local, Single-Molecule Oxidative Cleaving of DNA Origami by C₆₀ on an AFM Tip. 2021 external pagelinkcall_made

(56) Fracassi, A.; Cao, J.; Yoshizawa-Sugata, N.; Tóth, É. Archer, C.; Gröninger, O.; Ricciotti, E.; Tang, S. Y.; Handschin, S.; Bourgeois, J.-P., Ray, A.; Liosi, K.; Oriana,S.; Stark, W.; Masai, H.; Zhou, R.*; Yamakoshi, Y.*: LDL-mimetic lipid nanoparticles prepared by surface KAT ligation for in vivo MRI of atherosclerosis. Chem. Sci. 2020, 11, 11998-12008 [selected as inside cover].  external pagelinkcall_made

(55) Ray, A.; Liosi, K.; Ramakrishna, S. N.; Spencer, N. D.; Kuzuya, A.*; Yamakoshi, Y.*: Single-Molecule AFM Study of DNA Damage by ¹O₂ Generated from Photoexcited C₆₀. J. Phys. Chem. Lett. 2020, 11, 7819–7826. external pagelinkcall_made

(54) Semivrazhskaya, O.; Aroua, S.; Yulikov M.; Romero-Rivera, A.; Stevenson S.; Garcia-Borràs, M.; Osuna, S.*; Yamakoshi, Y.*: Regioselective Synthesis and Characterization of Tris- and Tetra-Prato Adducts of M₃N@C₈₀ (M = Y, Gd). J. Am. Chem. Soc. 2020, 142, 12954-​12965. external pagelinkcall_made

(53) Semivrazhskaya, O.; Romero-Rivera, A.; Aroua, S.; Troyanov, S. I.; Garcia-Borràs, M.; Stevenson, S.; Osuna, S.*; Yamakoshi, Y.*: Structures of Gd₃N@C₈₀ Prato Bis-Adducts: Crystal Structure, Thermal Isomerization, and Computational Study. J. Am. Chem. Soc. 2019, 141, 10988-10993. external pagelinkcall_made

(52) Liosi, K.; Romero-Rivera, A.; Semivrazhskaya, O.; Caniglia, C. D.; Garcia-Borràs, M.; Trapp, N.; Osuna, S.*; Yamakoshi, Y.*: Site-Selectivity of Prato Additions to C₇₀: Experimental and Theoretical Studies of a New Thermodynamic Product at the dd-[5,6]-Junction. Org. Lett. 2019, 21, 5162-5166. external pagelinkcall_made

(51) Aroua, S.; Ray, A.; Ebert, M.-O.; Yamakoshi, Y.*: Effect of Temperature and Solvent on the Structure of Amide Cavitands. Helv. Chim. Acta 2019, 102, e1900043. external pagelinkcall_made

(50) Aroua, S.; Lowell, A. N.; Ray, A.; Trapp, N.; Schweizer, W. B.; Ebert, M.-O.; Yamakoshi, Y.*: Larger Substitution on Amide Cavitands Induce Bigger Cavities. Org. Lett. 2019, 21, 201-205. external pagelinkcall_made

(49) Oriana, S.;^# Fracassi, A.;^# Archer, C.; Yamakoshi, Y.*: Covalent Surface Modification of Lipid Nanoparticles by Rapid Potassium Acyltrifluoroborate Amide Ligation, Langmuir 2018, 34, 13244-13251 (^#equal contribution). external pagelinkcall_made

(48) Tiu, E. G. V.; Liosi, K.; Aroua, S.; Yamakoshi, Y.*: Micelle vs Vesicle Formation Controlled by Distal Functionalization of C₆₀-PEG Conjugates, J. Mater. Chem. B 2017, 5, 6676-6680.

(47) Royappa, A. R.; Ayer, M.; Fracassi, A.; Ebert, M. O. Aroua, S.; Yamakoshi, Y.*: Conformationally Selective Synthesis of Mononitrocalix[4]arene in Cone or Partial Cone, Helv. Chim. Acta 2017, 100, 5.

(46) Oriana, S.; Cai, Y.; Bode, J. W.; Yamakoshi, Y.*: Synthesis of Tri-functionalized MMP2 FRET Probes Using a Chemo-selective and Late-stage Modification of Unprotected Peptides, Org. Biomol. Chem. 2017, 15, 1792-1800.external pagelinkcall_made

(45) Aroua, S.; Tiu, E. G. V.; Ishikawa, T.; Yamakoshi, Y.*: Well-Defined Amphiphilic C₆₀-PEG Conjugates: Water Soluble and Thermoresponsive Materials, Helv. Chim. Acta, 2016, 99, 10, 805-813.

(44) Kumar, R.; Gleißner, E.; Tiu, E. G. V.; and Yamakoshi, Y.*: C₇₀ as a Photocatalyst for Oxidation of Secondary Benzylamines to Imines, Org. Lett. 2016, 18, 184-187.

(43) Kumar, R.; Ramakrishna, S. N.; Naik, V. V.; Chu, Z.; Drew, M. E.; Spencer, N. D.; Yamakoshi, Y.*: Versatile Method for AFM-tip Functionalization with Biomolecules: Fishing a Ligand by Means of an in situ Click Reaction, Nanoscale, 2015, 7, 6599-6606.

(42) Aroua, S.; Tiu, E. G. V.; Ayer, M.; Ishikawa, T.; Yamakoshi, Y.*: RAFT Synthesis of Poly(vinylpyrrolidone) Amine and Preparation of a Water-soluble C₆₀-PVP Conjugate, Polymer Chem. 2015, 6, 2616–2619.

(41) Aroua, S.; Garcia-Borràs, M.; Bölter M. F.;, Osuna, S.*; Yamakoshi, Y.*: Endohedral Metal-Induced Regioselective Formation of Bis-Prato Adduct of Y₃N@I_h-C₈₀ and Gd₃N@I_h-C₈₀, J. Am. Chem. Soc. 2015, 137, 58-61.

(40) Aroua, S.; Garcia-Borras, M.; Osuna, S.*; Yamakoshi, Y.*: Essential Factors for Controlling the Equilibrium in Reversible Rearrangement of M₃N@I_h-C₈₀ Fulleropyrrolidines: Exohedral Functional Groups versus Endohedral Metal Clusters, Chem. Eur. J. 2014, 20, 14032-14039.

(39) Yamakoshi, Y.*; Aroua, S.; Nguyen, T.-M.; Iwamoto, Y.; Ohnishi, T.: Water-soluble Fullerene Materials for Bioapplication, Faraday Discuss. 2014, 173, 287-296.

(38) Aroua, S.; Schweizer, W. B.; Yamakoshi, Y.*: C₆₀ Pyrrolidine Bis-carboxylic Acid Derivative as a Versatile Precursor for Biocompatible Fullerenes, Org. Lett. 2014, 16, 1688-1691.

(37) Oriana, S.; Aroua, S.; Söllner, J. O. B.; Ma, X.; Iwamoto, Y.; Yamakoshi, Y.*: Water-soluble C₆₀– and C₇₀–PVP Polymers for Biomaterials with Efficient ¹O₂ Generation, Chem. Comm. 2013, 49, 9302–9304.external pagelinkcall_made

(36) Aroua, S.; Yamakoshi, Y.*: Prato Reaction of M₃N@I_h-C₈₀ (M = Sc, Lu, Y, Gd) with Reversible Isomerization, J. Am. Chem. Soc. 2012, 134, 20242–20245.

(35) Lowell, A. N.; Qiao, H.; Liu, T.; Ishikawa, T.; Zhang, H.; Oriana, S.; Wang, M.; Ricciotti, E.; Fitzgerald, G. A.; Zhou, R.*; Yamakoshi, Y.*: Functionalized Low-density Lipoprotein Nanoparticles for in vivo Enhancement of Atherosclerosis on Magnetic Resonance Images. Bioconjugate Chem. 2012, 23, 2313–2319.

(34) Drew, M. E.; Konicek, A. R.; Jaroenapibal, P.; Carpick, R. W.*; Yamakoshi, Y.*: Nanocrystalline Diamond AFM Tips for Chemical Force Spectroscopy: Fabrication and Photochemical Functionalization. J. Mater. Chem. 2012, 22, 12682–12688.external pagelinkcall_made

(33) Yamakoshi, Y.*; Qiao, H.; Lowell, A. N.; Woods, M.; Paulose, B.; Nakao, Y.; Zhang, H.; Liu, T.; Lund-Katz, S.; Zhou, R.*:LDL-based Nanoparticles for Contrast Enhanced MRI of Atheroplaques in Mouse Models.Chem. Comm. 2011, 47, 8835–8837.external pagelinkcall_made

(32) Takamatsu, D.; Fukui, K.*; Aroua, S.; Yamakoshi, Y.*: Photoswitching Tripodal Single Molecular Tip for Noncontact AFM Measurements: Synthesis, Immobilization, and Reversible Configurational Change on Gold Surface. Org. Biomol. Chem. 2010, 8, 3581–3808. [inside front cover] external pagelinkcall_made

(31) Drew, M. E.; Chworos, A.; Oroudjev, E.; Hansma, H.; Yamakoshi, Y.*: A Tripod Molecular Tip for Single Molecule Ligand－Receptor Force Spectroscopy by AFM. Langmuir 2010, 26, 7117–7125.external pagelinkcall_made

(30) Nakaoka, R.*; Yamakoshi, Y.; Isama, K.; Tsuchiya, T.: Study for Enhancing Differentiation Level of Osteoblasts by Surface Chemistry Prepared by Self-Assembled Monolayers. J. Biomed. Mat. Res.: Part A 2010, 94A, 524–532.

(26) Takamatsu, D.; Yamakoshi, Y.*; Fukui, K.*: Photoswitching Behavior of Nobel Single Molecular Tip of Noncontact Atomic Force Microscopy Designed for Chemical Identification. J. Phys. Chem. B 2006, 110, 1968－1970. (highlighted in Photonics Spectra Magazine)

(24) Azov, V. A.; Beeby, A; Cacciarini,M.; Cheetham,A. G.; Diederich, F.*; Frei, M.; Gimzewski, J. K.; Gramlich, V.; Hecht, B.; Jaun, B.; Latychevskaia, T.; Lieb, A.; Lill, Y.; Marotti, F.; Schlegel, A.; Schlittler, R. R.; Skinner, P. J.; Seiler, P.; Yamakoshi, Y.: Resorcin[4]arene Cavitand-Based Molecular Switches. Adv. Function. Mater. 2006, 16, 147–156. (inside front cover)

(23) Nakazawa, K.*; Yamakoshi, Y.; Tsuchiya, T.; Ohno, Y.: Purification and aqueous phase atomic force microscopic observation of recombinant P2X2 receptor. Eur. J. Pharmacol. 2005, 518, 107－110.

(20) Azov, V. A.; Skinner, P. J.; Yamakoshi, Y.; Seiler, P.; Gramlich, V.; Diederich, F.*: Functionalized and Partially or Differentially Bridged Resorcin[4]arene Cavitands: Synthesis and Solid-state Structures.Helv. Chim. Acta 2003, 86, 3648－3670.

(15) Yamakoshi, Y.; Schlittler, R. R.; Gimzewski, J. K.*; Diederich, F.*: Synthesis of Molecular-Gripper-Type Dynamic Receptors and STM Imaging of Self-Assembled Monolayer on Gold. J. Mat. Chem. 2001, 11, 2895－2897.

(28) Lee, J.; Yamakoshi Y.; Hughes, J. B.; Kim, J. H.*: Mechanism of C₆₀ Photochemistry in the Aqueous Phase: Fate of Triplet State and Radical Anion and Production of Reactive Oxygen Species. Environ. Sci. Technol. 2008, 42, 3459－3464.

(27) Iwamoto, Y.; Yamakoshi, Y.*: Highly Water-soluble C₆₀-NVP Copolymer: A Potential Material for Photodynamic Therapy. Chem. Commun. 2006, 4805–4807. (selected as a hot article) external pagelinkcall_made

(21) Okada, E.; Komazawa, Y.; Kurihara, M.; Inoue, H.; Miyata, N.; Okuda, H.; Tsuchiya T.; Yamakoshi, Y.*: Synthesis of C₆₀ Derivatives for Photoaffinity Labeling. Tetrahedraon Lett. 2004, 45, 527–529.

(19) Yamakoshi, Y.*; Umezawa, N.; Ryu, A.; Arakane, K.; Miyata, N.; Goda, Y.; Masumizu, T.; Nagano, T.: Active Oxygen Species Generate from Photoexcited Fullerene (C₆₀) as Potential Medicines: O₂^－● versus¹O₂. J. Am. Chem. Soc. 2003, 125, 12803－12809.

(17) Kai, Y.; Komazawa, Y.; Miyajima, A.; Miyata, N.; Yamakoshi, Y.*: [60]Fullerene as a novel photoinduced antibiotic. Fullerene Nanotubes and Carbon Nanostructures 2003, 11, 79－87.

(14) Yamakoshi, Y.*; Sueyoshi, S.; Miyata, N.: Biological Activity of Photoexcited Fullerene. Bull. Natl. Health Sci. 1999, 117, 50－62.

(13) Sakai, A.*; Yamakoshi, Y.; Miyata, N.: Visible Light Irradiation of [60]Fullerene Causes Killing and Initiation of Transformation in BALB/3T3 Cells. Fullerene Sci. Technol. 1999, 7, 743－746.

(12) Iwata, N.*; Mukai, T.; Yamakoshi, Y.; Hara, S.; Yanase, T.; Shoji, M.; Endo, T.; Miyata, N.: Effect of C₆₀, a Fullerene, on the Activities of Glutathione S-Transferase and Glutathion-related Enzymes.Fullerene Sci. Technol. 1998, 6, 213－226.

(11) Yamakoshi, Y.; Sueyoshi, S.; Fukuhara, K.; Miyata, N.*; Masumizu, T.; Kohno, M.: OH^-● and O₂^-● Generation in Aqueous C₆₀ and C₇₀ Solution by Photoirradiation. An EPR Study. J. Am. Chem. Soc. 1998,120, 12363–12367.

(10) Yamakoshi, Y.; Yagami, T.; Sueyoshi, S.; Miyata, N.: Acridine Adduct of [60]Fullerene with Enhanced DNA-Cleaving Activity. J. Org. Chem. 1996, 61, 7236–7237.

(8) Tsuchiya, T.*; Oguri, I.; Yamakoshi, Y.; Miyata, N.: Novel Harmful Effects of [60]Fullerene on Mouse Embryos in vitro and in vivo. FEBS Lett. 1996, 393, 139－145.

(7) Tsuchiya, T.*; Oguri, I.; Yamakoshi, Y.; Miyata, N.: Effect of [60]Fullerene on the Chondrogenesis in Mouse Embryonic Limb Bud Cell Culture System. Fullerene Sci. Technol. 1996, 4, 989－999.

(6) Tsuchiya, T.*; Yamakoshi, Y.; Miyata, N.: A Novel Promoting Action of Fullerene C₆₀ on the Chondrogenesis in Rat Embryonic Limb Bud Cell-culture System. Biochem. Biophys. Res. Commun. 1995, 206, 885－894.

(5) Sakai, A.*; Yamakoshi, Y.; Miyata, N.: The Effect of Fullerenes on the Initiation and Promotion Stages of BALB/3T3 Cell Transformation. Fullerene Sci. Technol. 1995, 3, 377－388.

(4) Yamakoshi, Y.; Yagami, T.; Fukuhara, K.; Sueyoshi, S.; Miyata, N.*: Solubilization of Fullerenes into Water with Polyvinylpyrrolidone Applicable to Biological Tests. J. Chem. Soc., Chem. Commun. 1994, 517－518.

(29) Miyajima, A.*; Sunouchi M.; Mitshinaga, K.; Yamakoshi, Y.; Usami, M.:Sexing of Postimplantation Rat Embryos in Stored Two-Dimensional Electrophoresis Samples by Polymerase Chain Reaction of an Sry Sequence. J. Toxicol. Sci. 2009, 34, 681－685.

(22) Nagira, T.; Matthew, S. B.; Yamakoshi, Y.; Tsuchiya, T.*: Enhancement of Gap Junctional Intercellular Communication of Normal Human Dermal Fibroblasts Cultured on Polystyrene Dishes Grafted with Poly-N-isopropylacrylamide. Tissue Engineering 2005, 11, 1392－1397.

(25) Nishikawa, K.*; Machida, H.; Yamakoshi, Y.; Ohtomo, R.; Saito, K.; Saito, M.; Tominaga, N.: Polyphosphate Metabolism in an Acidophilic Alga Chlamydomonas acidophila KT-1 (Chlorophyta) under Phosphate Stress. Plant Sci. 2006, 170, 307－313.

(18) Nishikawa, K.*; Yamakoshi, Y.; Uemura, I.; Tominaga, N.: Ultrastructural Changes in Chlamydomonas acidophila (Chlorophyta) Induced by Heavy Metals and Polyposphate Metabolism. FEMS Microbiol. Ecology 2003, 44, 253－259.

(16) Takahashi, T.*; Yamakoshi, Y.; Ge, W.-Y.; Sugita, J.; Okayama, K.; Koizumi, T.: High-Pressure Mediated Asymmetric Diels-Alder Reaction of Chiral Sulfinyl Acrylate Derivatives and Its Application to Chiral Synthesis of (－)-COTC and (－)-Gabosine C. Heterocycles 2002, 56, 209－220.

(9) Yamakoshi, Y.; Ge, W.-Y.; Sugita, J.; Okayama, K.; Takahashi, T.; Koizumi, T.*: High Pressure Mediated Asymmetric Diels-Alder Reaction of Chiral Sulinylacrylate Derivatives with Furan and 2-Methoxyfuran.Heterocycles 1996, 42, 129－133.